recipe ngs_te_mapper2

A program to identify transposable element insertions using next generation sequencing data.

Homepage:

https://github.com/bergmanlab/ngs_te_mapper2

License:

BSD

Recipe:

/ngs_te_mapper2/meta.yaml

package ngs_te_mapper2

Versions:

1.0.2-1,  1.0.2-0

Depends:

• bcftools

• bedtools

• biopython

• bwa

• minimap2

• numpy

• pip

• pysam

• python >=3.6

• repeatmasker 4.0.7.*

• samtools >=1.9

• seqtk

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install ngs_te_mapper2

and update with:

conda update ngs_te_mapper2

or use the docker container:

docker pull quay.io/biocontainers/ngs_te_mapper2:<tag>

(see ngs_te_mapper2/tags for valid values for <tag>)

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Link to this page

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