recipe ngsderive

Backwards derive attributes from NGS data

Homepage:

https://github.com/stjudecloud/ngsderive

Documentation:

https://stjudecloud.github.io/ngsderive/

License:

MIT / MIT

Recipe:

/ngsderive/meta.yaml

package ngsderive

versions:

4.0.0-0,  3.3.2-0,  3.3.1-0,  3.3.0-0,  3.2.1-0,  3.1.1-0,  3.1.0-0,  2.4.0-0,  2.3.1-0, 

4.0.0-0,  3.3.2-0,  3.3.1-0,  3.3.0-0,  3.2.1-0,  3.1.1-0,  3.1.0-0,  2.4.0-0,  2.3.1-0,  2.2.0-2,  2.2.0-1,  2.2.0-0,  1.2.0-0,  1.1.0-0,  1.0.2-0,  1.0.1-0,  1.0.0-0

depends colorlog:

>=6.6.0

depends gtfparse:

>=1.2.1

depends pygtrie:

>=2.5.0

depends pysam:

>=0.21

depends pytabix:

>=0.1

depends python:

>=3.8

depends rstr:

>=3.0.0

depends sortedcontainers:

>=2.4.0

depends tabix:

>=1.11

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ngsderive

and update with::

   mamba update ngsderive

To create a new environment, run:

mamba create --name myenvname ngsderive

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/ngsderive:<tag>

(see `ngsderive/tags`_ for valid values for ``<tag>``)

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Render an badge with the following MarkDown:

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