recipe ngsfetch

Fast retrieval of metadata and fastq files with ffq and aria2c

Homepage:

https://github.com/NaotoKubota/ngsfetch

License:

MIT

Recipe:

/ngsfetch/meta.yaml

Fast retrieval of metadata and fastq files with ffq and aria2c

package ngsfetch

versions:

0.1.1-0

depends aria2:

>=0.0.1b0

depends ffq:

>=0.3.1

depends python:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ngsfetch

and update with::

   mamba update ngsfetch

To create a new environment, run:

mamba create --name myenvname ngsfetch

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/ngsfetch:<tag>

(see `ngsfetch/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ngsfetch/README.html)