recipe nthits

ntHits is a tool for efficiently counting and filtering k-mers based on their frequencies

Homepage:

https://github.com/bcgsc/ntHits

License:

MIT / MIT

Recipe:

/nthits/meta.yaml

package nthits

versions:

1.0.3-2,  1.0.3-1,  1.0.3-0,  1.0.2-0,  1.0.1-1,  1.0.1-0,  0.0.1-2,  0.0.1-1,  0.0.1-0

depends _openmp_mutex:

>=4.5

depends btllib:

>=1.5.0

depends btllib:

>=1.7.3,<2.0a0

depends libgcc:

>=13

depends libstdcxx:

>=13

requirements:

additional platforms:

linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install nthits

and update with::

   mamba update nthits

To create a new environment, run:

mamba create --name myenvname nthits

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/nthits:<tag>

(see `nthits/tags`_ for valid values for ``<tag>``)

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