recipe ntjoin

Genome assembly scaffolder using minimizer graphs

Homepage:

http://www.bcgsc.ca/platform/bioinfo/software/ntjoin

License:

GPL-3.0

Recipe:

/ntjoin/meta.yaml

package ntjoin

Versions:

1.1.1-2,  1.1.1-1,  1.1.1-0,  1.1.0-0,  1.0.8-1,  1.0.8-0,  1.0.7-0,  1.0.6-1,  1.0.6-0, 

1.1.1-2,  1.1.1-1,  1.1.1-0,  1.1.0-0,  1.0.8-1,  1.0.8-0,  1.0.7-0,  1.0.6-1,  1.0.6-0,  1.0.5-1,  1.0.5-0,  1.0.3-0,  1.0.2-0,  1.0.1-0

Depends:

• bedtools >=2.21.0

• btllib <=1.4.10

• libcxx >=15.0.7

• libzlib >=1.2.13,<1.3.0a0

• make

• pybedtools

• pymannkendall

• pysam >=0.16.0

• python >=3.10,<3.11.0a0

• python-igraph

• python_abi 3.10.* *_cp310

• samtools >=1.10

• zlib

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install ntjoin

and update with:

conda update ntjoin

or use the docker container:

docker pull quay.io/biocontainers/ntjoin:<tag>

(see ntjoin/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ntjoin/README.html)