recipe ntroot

Ancestry inference from genomic data

Homepage:

https://github.com/bcgsc/ntroot

License:

GPL-3.0

Recipe:

/ntroot/meta.yaml

package ntroot

versions:

1.1.5-0,  1.1.4-0,  1.1.3-0,  1.1.2-1,  1.1.2-0,  1.1.1-0,  1.1.0-0,  1.0.1-2,  1.0.1-1, 

1.1.5-0,  1.1.4-0,  1.1.3-0,  1.1.2-1,  1.1.2-0,  1.1.1-0,  1.1.0-0,  1.0.1-2,  1.0.1-1,  1.0.1-0,  1.0.0-0

depends bedtools:

depends ntedit:

>=2.0.2

depends perl:

>=5.32.1,<6.0a0 *_perl5

depends python:

>=3.9

depends samtools:

depends snakemake:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ntroot

and update with::

   mamba update ntroot

To create a new environment, run:

mamba create --name myenvname ntroot

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/ntroot:<tag>

(see `ntroot/tags`_ for valid values for ``<tag>``)

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