recipe ntsm

ntsm - Nucleotide Sequence/Sample Matcher

Homepage:

https://github.com/JustinChu/ntsm

Documentation:

https://github.com/JustinChu/ntsm/blob/1.2.1/README.md

License:

MIT / MIT

Recipe:

/ntsm/meta.yaml

package ntsm

versions:

1.2.1-1,  1.2.1-0,  1.2.0-0

depends _openmp_mutex:

>=4.5

depends bwa:

depends libgcc:

>=13

depends libgomp:

depends libstdcxx:

>=13

depends libzlib:

>=1.3.1,<2.0a0

depends make:

depends numpy:

depends pandas:

depends perl:

depends pyfaidx:

depends python:

depends samtools:

depends scikit-learn:

requirements:

additional platforms:

linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ntsm

and update with::

   mamba update ntsm

To create a new environment, run:

mamba create --name myenvname ntsm

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/ntsm:<tag>

(see `ntsm/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ntsm/README.html)