- recipe nullarbor
Reads to report pipeline for bacterial isolate NGS data
- Homepage:
- License:
GPL2
- Recipe:
- package nullarbor¶
-
- Versions:
2.0.20191013-3
,2.0.20191013-2
,2.0.20191013-1
,2.0.20191013-0
,2.0.20191007-0
,2.0.20191003-0
,2.0.20181010-5
,2.0.20181010-4
,2.0.20181010-2
- Depends:
abricate
>=1.0.1
any2fasta
>=0.4.2
centrifuge
>=1.0
fasttree
>=2.1.10
iqtree
>=2.2.0
kraken
>=1.1
kraken2
>=2.1.2
make
>=4.2
mash
>=2.3
megahit
>=1.1.3
mlst
>=2.22.0
newick_utils
>=1.6
perl
5.26.2.*
perl-bioperl
1.7.2.*
perl-list-moreutils
>=0.428
prokka
>=1.14.6
quicktree
>=2.5
roary
>=3.13
samtools
>=1.9
seqtk
>=1.3
shovill
>=1.1.0
skesa
>=2.4
snippy
>=4.4.3
snp-dists
>=0.8.2
snpeff
5.0.*
spades
>=3.15
trimmomatic
>=0.39
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install nullarbor
and update with:
conda update nullarbor
or use the docker container:
docker pull quay.io/biocontainers/nullarbor:<tag>
(see nullarbor/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/nullarbor/README.html)