recipe oakvar

OakVar - Genomic Variant Analysis Platform

Homepage:

https://github.com/rkimoakbioinformatics/oakvar

Documentation:

https://rkimoakbioinformatics.github.io/oakvar/

Developer docs:

https://pypi.org/project/oakvar/

License:

AGPL / AGPL-3.0-or-later

Recipe:

/oakvar/meta.yaml

Links:

biotools: oakvar

package oakvar

versions:

2.9.116-0,  2.9.114-0,  2.9.112-0,  2.9.111-0,  2.9.110-0,  2.9.109-0,  2.9.106-0,  2.9.97-0,  2.9.96-0, 

2.9.116-0,  2.9.114-0,  2.9.112-0,  2.9.111-0,  2.9.110-0,  2.9.109-0,  2.9.106-0,  2.9.97-0,  2.9.96-0,  2.9.95-0,  2.9.94-0,  2.9.93-0,  2.9.92-0,  2.9.91-0,  2.9.90-0,  2.9.89-0,  2.9.88-0,  2.9.87-0,  2.9.85-0,  2.9.83-0,  2.9.82-0,  2.9.81-0,  2.9.80-0,  2.9.78-0,  2.9.77-0,  2.9.75-0,  2.9.72-0,  2.9.71-0,  2.9.69-0,  2.9.68-0,  2.9.64-0,  2.9.62-0,  2.9.60-0,  2.9.59-0,  2.9.58-0,  2.9.57-0,  2.9.56-0,  2.9.55-0,  2.9.54-0,  2.9.53-0,  2.9.52-0,  2.9.51-0,  2.9.49-0,  2.9.43-0,  2.9.41-0,  2.9.39-0,  2.9.37-0,  2.9.36-0,  2.9.34-0,  2.9.3-0,  2.9.2-0,  2.9.1-0,  2.8.40-0,  2.8.38-0,  2.8.37-0,  2.8.36-0,  2.8.35-0,  2.8.28-0,  2.7.40-0

depends aiohttp:

<4.0.0

depends aiohttp-cors:

depends aiosqlite:

depends chardet:

>=3.0.4

depends connectorx:

depends download:

depends duckdb:

depends gdown:

depends intervaltree:

depends liftover:

depends markdown:

depends mpmath:

depends multiprocess:

depends nest-asyncio:

depends oyaml:

depends packaging:

depends pillow:

depends polars:

depends psutil:

depends pyarrow:

depends pyjwt:

depends python:

>=3.8

depends python-dateutil:

depends requests:

depends requests-toolbelt:

depends rich:

depends split-file-reader:

depends twobitreader:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install oakvar

and update with::

   mamba update oakvar

To create a new environment, run:

mamba create --name myenvname oakvar

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/oakvar:<tag>

(see `oakvar/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

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