recipe obitools

The OBITools package is a set of programs specifically designed for analyzing NGS data in a DNA metabarcoding context, taking into account taxonomic information

Homepage:

http://metabarcoding.org/obitools

License:

CeCILL-V2

Recipe:

/obitools/meta.yaml

package obitools

versions:

1.2.13-4,  1.2.13-3,  1.2.13-2,  1.2.13-1,  1.2.13-0,  1.2.11-1,  1.2.11-0,  1.2.10-2,  1.2.10-1, 

1.2.13-4,  1.2.13-3,  1.2.13-2,  1.2.13-1,  1.2.13-0,  1.2.11-1,  1.2.11-0,  1.2.10-2,  1.2.10-1,  1.2.10-0,  1.0.010-2,  1.0.010-1,  1.0.010-0

depends ipython:

>=3.0.0,<6.0

depends libgcc-ng:

>=10.3.0

depends python:

>=2.7,<2.8.0a0

depends python_abi:

2.7.* *_cp27mu

depends xorg-libx11:

depends xorg-libxau:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install obitools

and update with::

   mamba update obitools

To create a new environment, run:

mamba create --name myenvname obitools

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/obitools:<tag>

(see `obitools/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/obitools/README.html)