recipe oligotyping

The oligotyping and minimum entropy decomposition (MED) pipeline for the analysis of marker gene amplicons

Homepage

http://oligotyping.org

License

GNU General Public License v3 or later (GPLv3+)

Recipe

/oligotyping/meta.yaml

package oligotyping

(downloads) docker_oligotyping

Versions

2.1-0, 2.0-0

Depends biopython

Depends blast

Depends django

Depends matplotlib

Depends python

2.7*

Depends r-compute.es

Depends r-ggplot2

Depends r-gplots

Depends r-gtools

Depends r-optparse

Depends r-pheatmap

Depends r-rcolorbrewer

Depends r-reshape

Depends r-vegan

Depends scipy

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install oligotyping

and update with:

conda update oligotyping

or use the docker container:

docker pull quay.io/biocontainers/oligotyping:<tag>

(see oligotyping/tags for valid values for <tag>)