recipe omamer

OMAmer - tree-driven and alignment-free protein assignment to sub-families

Homepage:

https://github.com/DessimozLab/omamer

License:

LGPL-3.0

Recipe:

/omamer/meta.yaml

Links:

doi: 10.1093/bioinformatics/btab219

package omamer

versions:

2.1.0-0,  2.0.5-0,  2.0.4-0,  2.0.3-0,  2.0.2-0,  2.0.1-0

depends alive-progress:

depends biopython:

depends ete3:

depends numba:

depends numpy:

<2

depends pandas:

>2.0.0

depends property-manager:

depends pysais:

depends pytables:

depends python:

>=3.8

depends rmath4:

depends scipy:

depends tqdm:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install omamer

and update with::

   mamba update omamer

To create a new environment, run:

mamba create --name myenvname omamer

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/omamer:<tag>

(see `omamer/tags`_ for valid values for ``<tag>``)

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