recipe onto2nx

A package for parsing ontologies in the OWL and OBO format into NetworkX graphs

Homepage:

https://github.com/cthoyt/onto2nx

Documentation:

https://onto2nx.readthedocs.io/en/latest/

License:

GPL / GPL 3.0

Recipe:

/onto2nx/meta.yaml

package onto2nx

versions:

0.1.1-0,  0.1.0-0

depends click:

depends networkx:

1.11

depends python:

depends rdflib:

4.2.1

depends rdflib-jsonld:

depends requests:

depends requests-file:

depends sparqlwrapper:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install onto2nx

and update with::

   mamba update onto2nx

To create a new environment, run:

mamba create --name myenvname onto2nx

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/onto2nx:<tag>

(see `onto2nx/tags`_ for valid values for ``<tag>``)

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