recipe opencontactcli

Static contact mapping algorithm to identify potential peptide biomimetics from protein interaction partner structure files.

Homepage:

https://github.com/galaxyproteomics/OpenContact/tree/master

License:

https://github.com/galaxyproteomics/OpenContact/blob/master/LICENSE_AGREEMENT/OpenContact_License.txt

Recipe:

/opencontactcli/meta.yaml

package opencontactcli

versions:

1.1-7,  1.1-6,  1.1-5,  1.1-4,  1.1-3,  1.1-2,  1.1-1,  1.1-0

depends libgcc-ng:

>=12

depends libgfortran-ng:

depends libgfortran5:

>=12.2.0

depends numpy:

>=1.21.6,<2.0a0

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install opencontactcli

and update with::

   mamba update opencontactcli

To create a new environment, run:

mamba create --name myenvname opencontactcli

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/opencontactcli:<tag>

(see `opencontactcli/tags`_ for valid values for ``<tag>``)

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