recipe openms-meta

OpenMS is an open-source software C++ library for LC-MS data management and analyses

Homepage:

https://github.com/OpenMS/OpenMS

License:

BSD

Recipe:

/openms-meta/meta.yaml

Links:

biotools: openms, usegalaxy-eu: openms_fileconverter, doi: 10.1038/nmeth.3959

package libopenms

(downloads) docker_libopenms

versions:
3.2.0-5,  3.2.0-4,  3.1.0-4,  3.1.0-3,  3.1.0-2,  3.1.0-1,  3.0.0-1,  3.0.0-0,  2.9.1-4, 

3.2.0-5,  3.2.0-4,  3.1.0-4,  3.1.0-3,  3.1.0-2,  3.1.0-1,  3.0.0-1,  3.0.0-0,  2.9.1-4,  2.9.1-1,  2.9.1-0,  2.9.0-0,  2.8.0-4,  2.8.0-3,  2.8.0-2,  2.8.0-1,  2.8.0-0,  2.7.0-1,  2.6.0-0,  2.5.0-6,  2.5.0-5,  2.5.0-4,  2.5.0-3,  2.5.0-2,  2.5.0-1,  2.5.0-0,  2.4.0-3

depends __glibc:

>=2.17,<3.0.a0

depends bzip2:

>=1.0.8,<2.0a0

depends hdf5:

>=1.14.3,<1.14.4.0a0

depends libzlib:

>=1.2.13,<2.0a0

depends qt-main:

>=5.15.8,<5.16.0a0

depends xerces-c:

>=3.2.5,<3.3.0a0

depends yaml-cpp:

>=0.8.0,<0.9.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install libopenms

and update with::

   mamba update libopenms

To create a new environment, run:

mamba create --name myenvname libopenms

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/libopenms:<tag>

(see `libopenms/tags`_ for valid values for ``<tag>``)
package openms

(downloads) docker_openms

versions:
3.2.0-5,  3.2.0-4,  3.1.0-4,  3.1.0-3,  3.1.0-2,  3.1.0-1,  3.0.0-1,  3.0.0-0,  2.9.1-4, 

3.2.0-5,  3.2.0-4,  3.1.0-4,  3.1.0-3,  3.1.0-2,  3.1.0-1,  3.0.0-1,  3.0.0-0,  2.9.1-4,  2.9.1-1,  2.9.1-0,  2.9.0-0,  2.8.0-4,  2.8.0-3,  2.8.0-2,  2.8.0-1,  2.8.0-0,  2.7.0-1,  2.6.0-0,  2.5.0-6,  2.5.0-5,  2.5.0-4,  2.5.0-3,  2.5.0-2,  2.5.0-1,  2.5.0-0,  2.4.0-1,  2.4.0-0,  2.3.0-3,  2.3.0-2,  2.3.0-1,  2.3.0-0,  2.2.0-2,  2.2.0-1,  2.2.0-0,  2.1.0-0

depends __glibc:

>=2.17,<3.0.a0

depends boost-cpp:

>=1.85.0,<1.86.0a0

depends bzip2:

>=1.0.8,<1.1.0a0

depends bzip2:

>=1.0.8,<2.0a0

depends coinmp:

>=1.8.4,<1.9.0a0

depends eigen:

>=3.4.0,<3.5.0a0

depends hdf5:

>=1.14.3,<1.14.4.0a0

depends hdf5:

>=1.14.3,<1.15.0a0

depends libopenms:

3.2.0 haddbca4_5

depends libsvm:

>=332,<333.0a0

depends libzlib:

>=1.2.13,<2.0a0

depends qt-main:

>=5.15.8,<5.16.0a0

depends xerces-c:

>=3.2.5,<3.3.0a0

depends yaml-cpp:

>=0.8.0,<0.9.0a0

depends zlib:

>=1.2.13,<1.3.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install openms

and update with::

   mamba update openms

To create a new environment, run:

mamba create --name myenvname openms

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/openms:<tag>

(see `openms/tags`_ for valid values for ``<tag>``)
package openms-meta

(downloads) docker_openms-meta

versions:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install openms-meta

and update with::

   mamba update openms-meta

To create a new environment, run:

mamba create --name myenvname openms-meta

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/openms-meta:<tag>

(see `openms-meta/tags`_ for valid values for ``<tag>``)
package openms-thirdparty

(downloads) docker_openms-thirdparty

versions:
3.2.0-5,  3.2.0-4,  3.1.0-4,  3.1.0-3,  3.1.0-2,  3.1.0-1,  3.0.0-1,  3.0.0-0,  2.9.1-4, 

3.2.0-5,  3.2.0-4,  3.1.0-4,  3.1.0-3,  3.1.0-2,  3.1.0-1,  3.0.0-1,  3.0.0-0,  2.9.1-4,  2.9.1-1,  2.9.1-0,  2.9.0-0,  2.8.0-4,  2.8.0-3,  2.8.0-2,  2.8.0-1,  2.8.0-0,  2.7.0-1,  2.6.0-0,  2.5.0-6,  2.5.0-5,  2.5.0-4,  2.5.0-3,  2.5.0-2,  2.5.0-1,  2.5.0-0

depends comet-ms:

2023012

depends gnuplot:

depends luciphor2:

2020_04_03

depends msgf_plus:

2023.01.1202

depends openms:

3.2.0 haddbca4_5

depends percolator:

3.5

depends r-gplots:

depends sage-proteomics:

0.14.4

depends sirius-ms:

5.8.2

depends thermorawfileparser:

1.4.3

depends xtandem:

15.12.15.2

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install openms-thirdparty

and update with::

   mamba update openms-thirdparty

To create a new environment, run:

mamba create --name myenvname openms-thirdparty

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/openms-thirdparty:<tag>

(see `openms-thirdparty/tags`_ for valid values for ``<tag>``)

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Link to this page

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