recipe openms-meta

OpenMS is an open-source software C++ library for LC-MS data management and analyses

Homepage:

https://github.com/OpenMS/OpenMS

License:

BSD

Recipe:

/openms-meta/meta.yaml

Links:

biotools: openms, usegalaxy-eu: openms_fileconverter, doi: 10.1038/nmeth.3959

package libopenms

Versions:

2.8.0-4,  2.8.0-3,  2.8.0-2,  2.8.0-1,  2.8.0-0,  2.7.0-1,  2.6.0-0,  2.5.0-6,  2.5.0-5, 

2.8.0-4,  2.8.0-3,  2.8.0-2,  2.8.0-1,  2.8.0-0,  2.7.0-1,  2.6.0-0,  2.5.0-6,  2.5.0-5,  2.5.0-4,  2.5.0-3,  2.5.0-2,  2.5.0-1,  2.5.0-0,  2.4.0-3

Depends:

• bzip2 >=1.0.8,<2.0a0

• glpk >=5.0,<5.1.0a0

• hdf5 >=1.12.2,<1.12.3.0a0

• libsqlite >=3.39.4,<4.0a0

• libzlib >=1.2.13,<1.3.0a0

• qt >=5.12.9,<5.13.0a0

• xerces-c >=3.2.3,<3.3.0a0

Required By:

• pyopenms

• openms

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install libopenms

and update with:

conda update libopenms

or use the docker container:

docker pull quay.io/biocontainers/libopenms:<tag>

(see libopenms/tags for valid values for <tag>)

package openms

Versions:

2.8.0-4,  2.8.0-3,  2.8.0-2,  2.8.0-1,  2.8.0-0,  2.7.0-1,  2.6.0-0,  2.5.0-6,  2.5.0-5, 

2.8.0-4,  2.8.0-3,  2.8.0-2,  2.8.0-1,  2.8.0-0,  2.7.0-1,  2.6.0-0,  2.5.0-6,  2.5.0-5,  2.5.0-4,  2.5.0-3,  2.5.0-2,  2.5.0-1,  2.5.0-0,  2.4.0-1,  2.4.0-0,  2.3.0-3,  2.3.0-2,  2.3.0-1,  2.3.0-0,  2.2.0-2,  2.2.0-1,  2.2.0-0,  2.1.0-0

Depends:

• boost-cpp >=1.74.0,<1.74.1.0a0

• bzip2 >=1.0.8,<2.0a0

• coinmp >=1.8.4,<1.9.0a0

• eigen >=3.4.0,<3.5.0a0

• glpk >=5.0,<5.1.0a0

• hdf5 >=1.12.2,<1.12.3.0a0

• hdf5 >=1.12.2,<1.13.0a0

• libopenms 2.8.0 h604f271_4

• libsqlite >=3.39.4,<4.0a0

• libsvm >=3.21,<3.22.0a0

• libzlib >=1.2.13,<1.3.0a0

• qt >=5.12.9,<5.13.0a0

• sqlite >=3.39.4,<4.0a0

• xerces-c >=3.2.3,<3.3.0a0

• zlib >=1.2.13,<1.3.0a0

Required By:

• openms-thirdparty

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install openms

and update with:

conda update openms

or use the docker container:

docker pull quay.io/biocontainers/openms:<tag>

(see openms/tags for valid values for <tag>)

package openms-meta

Versions:

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install openms-meta

and update with:

conda update openms-meta

or use the docker container:

docker pull quay.io/biocontainers/openms-meta:<tag>

(see openms-meta/tags for valid values for <tag>)

package openms-thirdparty

Versions:

2.8.0-4,  2.8.0-3,  2.8.0-2,  2.8.0-1,  2.8.0-0,  2.7.0-1,  2.6.0-0,  2.5.0-6,  2.5.0-5, 

2.8.0-4,  2.8.0-3,  2.8.0-2,  2.8.0-1,  2.8.0-0,  2.7.0-1,  2.6.0-0,  2.5.0-6,  2.5.0-5,  2.5.0-4,  2.5.0-3,  2.5.0-2,  2.5.0-1,  2.5.0-0

Depends:

• bumbershoot 3_0_21142_0e4f4a4

• comet-ms 2019015

• crux-toolkit 3.2

• fido 1.0

• gnuplot

• luciphor2 2020_04_03

• msgf_plus 2021.03.22

• openms 2.8.0 h604f271_4

• pepnovo 20101117

• percolator 3.5

• r-gplots

• sirius-csifingerid 4.9.*

• thermorawfileparser 1.3.4

• xtandem 15.12.15.2

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install openms-thirdparty

and update with:

conda update openms-thirdparty

or use the docker container:

docker pull quay.io/biocontainers/openms-thirdparty:<tag>

(see openms-thirdparty/tags for valid values for <tag>)

Download stats

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