Package Recipe 'openms-meta'

recipe openms-meta

OpenMS is an open-source software C++ library for LC-MS data management and analyses

Homepage: https://github.com/OpenMS/OpenMS
License: BSD
Recipe: /openms-meta/meta.yaml
Links: biotools: openms, usegalaxy-eu: openms_fileconverter, doi: 10.1038/nmeth.3959

package libopenms¶

Versions

2.6.0-0, 2.5.0-6, 2.5.0-5, 2.5.0-4, 2.5.0-3, 2.5.0-2, 2.5.0-1, 2.5.0-0, 2.4.0-3

Depends

bzip2 >=1.0.8,<2.0a0
hdf5 >=1.10.5,<1.10.6.0a0
libgcc-ng >=7.5.0
libstdcxx-ng >=7.5.0
qt >=5.12.9,<5.13.0a0
sqlite >=3.33.0,<4.0a0
xerces-c >=3.2.3,<3.3.0a0
zlib >=1.2.11,<1.3.0a0

Required By

openms
pyopenms

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install libopenms

and update with:

conda update libopenms

or use the docker container:

docker pull quay.io/biocontainers/libopenms:<tag>

(see libopenms/tags for valid values for <tag>)

package openms¶

Versions

2.6.0-0, 2.5.0-6, 2.5.0-5, 2.5.0-4, 2.5.0-3, 2.5.0-2, 2.5.0-1, 2.5.0-0, 2.4.0-1,

2.6.0-0, 2.5.0-6, 2.5.0-5, 2.5.0-4, 2.5.0-3, 2.5.0-2, 2.5.0-1, 2.5.0-0, 2.4.0-1, 2.4.0-0, 2.3.0-3, 2.3.0-2, 2.3.0-1, 2.3.0-0, 2.2.0-2, 2.2.0-1, 2.2.0-0, 2.1.0-0

Depends

boost-cpp >=1.70.0,<1.70.1.0a0
bzip2 >=1.0.8,<2.0a0
coinmp >=1.8.4,<1.9.0a0
eigen >=3.3.7,<3.4.0a0
glpk >=4.65,<4.66.0a0
hdf5 >=1.10.5,<1.10.6.0a0
hdf5 >=1.10.5,<1.11.0a0
libgcc-ng >=7.5.0
libopenms 2.6.0 h4afb90d_0
libstdcxx-ng >=7.5.0
libsvm >=3.21,<3.22.0a0
qt >=5.12.9,<5.13.0a0
sqlite >=3.33.0,<4.0a0
xerces-c >=3.2.3,<3.3.0a0
zlib >=1.2.11,<1.3.0a0

Required By

openms-thirdparty

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install openms

and update with:

conda update openms

or use the docker container:

docker pull quay.io/biocontainers/openms:<tag>

(see openms/tags for valid values for <tag>)

package openms-meta¶

Versions

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install openms-meta

and update with:

conda update openms-meta

or use the docker container:

docker pull quay.io/biocontainers/openms-meta:<tag>

(see openms-meta/tags for valid values for <tag>)

package openms-thirdparty¶

Versions

2.6.0-0, 2.5.0-6, 2.5.0-5, 2.5.0-4, 2.5.0-3, 2.5.0-2, 2.5.0-1, 2.5.0-0

Depends

bumbershoot 3_0_11579
comet-ms 2019015
crux-toolkit 3.2
fido 1.0
gnuplot
luciphor2 2020_04_03
msgf_plus 2020.08.05
omssa 2.1.9
openms 2.6.0 h4afb90d_0
pepnovo 20101117
percolator 3.5
sirius-csifingerid 4.0.1
thermorawfileparser 1.2.3
xtandem 15.12.15.2

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install openms-thirdparty

and update with:

conda update openms-thirdparty

or use the docker container:

docker pull quay.io/biocontainers/openms-thirdparty:<tag>

(see openms-thirdparty/tags for valid values for <tag>)

package pyopenms¶

Versions

2.6.0-0, 2.5.0-6, 2.5.0-5, 2.5.0-4, 2.5.0-3, 2.5.0-2, 2.5.0-1, 2.5.0-0, 2.4.0-3,

2.6.0-0, 2.5.0-6, 2.5.0-5, 2.5.0-4, 2.5.0-3, 2.5.0-2, 2.5.0-1, 2.5.0-0, 2.4.0-3, 2.4.0-0

Depends

boost >=1.70.0,<1.70.1.0a0
bzip2 >=1.0.8,<2.0a0
coinmp >=1.8.4,<1.9.0a0
eigen >=3.3.7,<3.4.0a0
glpk >=4.65,<4.66.0a0
hdf5 >=1.10.5,<1.10.6.0a0
hdf5 >=1.10.5,<1.11.0a0
libgcc-ng >=7.5.0
libopenms 2.6.0 h4afb90d_0
libstdcxx-ng >=7.5.0
libsvm >=3.21,<3.22.0a0
numpy
python >=2.7,<2.8.0a0 *_cpython
python_abi 2.7.* *_cp27mu
qt >=5.12.9,<5.13.0a0
sqlite >=3.33.0,<4.0a0
xerces-c >=3.2.3,<3.3.0a0
zlib >=1.2.11,<1.3.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install pyopenms

and update with:

conda update pyopenms

or use the docker container:

docker pull quay.io/biocontainers/pyopenms:<tag>

(see pyopenms/tags for valid values for <tag>)

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/openms-meta/README.html)