recipe openms-meta

OpenMS is an open-source software C++ library for LC-MS data management and analyses

Homepage

https://github.com/OpenMS/OpenMS

License

BSD

Recipe

/openms-meta/meta.yaml

Links

biotools: openms, doi: 10.1038/nmeth.3959

package libopenms

Versions

2.5.0-4,  2.5.0-3,  2.5.0-2,  2.5.0-1,  2.5.0-0,  2.4.0-3

Depends

• bzip2 >=1.0.8,<2.0a0

• hdf5 >=1.10.5,<1.10.6.0a0

• libgcc-ng >=7.5.0

• libstdcxx-ng >=7.5.0

• qt >=5.12.5,<5.13.0a0

• sqlite >=3.32.3,<4.0a0

• xerces-c >=3.2.2,<3.2.3.0a0

• zlib >=1.2.11,<1.3.0a0

Required By

• openms

• pyopenms

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install libopenms

and update with:

conda update libopenms

or use the docker container:

docker pull quay.io/biocontainers/libopenms:<tag>

(see libopenms/tags for valid values for <tag>)

package openms

Versions

2.5.0-4,  2.5.0-3,  2.5.0-2,  2.5.0-1,  2.5.0-0,  2.4.0-1,  2.4.0-0,  2.3.0-3,  2.3.0-2, 

2.5.0-4,  2.5.0-3,  2.5.0-2,  2.5.0-1,  2.5.0-0,  2.4.0-1,  2.4.0-0,  2.3.0-3,  2.3.0-2,  2.3.0-1,  2.3.0-0,  2.2.0-2,  2.2.0-1,  2.2.0-0,  2.1.0-0

Depends

• boost-cpp >=1.70.0,<1.70.1.0a0

• bzip2 >=1.0.8,<2.0a0

• coinmp >=1.8.4,<1.9.0a0

• eigen >=3.3.7,<3.4.0a0

• glpk >=4.65,<4.66.0a0

• hdf5 >=1.10.5,<1.10.6.0a0

• hdf5 >=1.10.5,<1.11.0a0

• libgcc-ng >=7.5.0

• libopenms 2.5.0 h463af6b_4

• libstdcxx-ng >=7.5.0

• libsvm >=3.21,<3.22.0a0

• qt >=5.12.5,<5.13.0a0

• sqlite >=3.32.3,<4.0a0

• xerces-c >=3.2.2,<3.2.3.0a0

• zlib >=1.2.11,<1.3.0a0

Required By

• openms-thirdparty

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install openms

and update with:

conda update openms

or use the docker container:

docker pull quay.io/biocontainers/openms:<tag>

(see openms/tags for valid values for <tag>)

package openms-meta

Versions

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install openms-meta

and update with:

conda update openms-meta

or use the docker container:

docker pull quay.io/biocontainers/openms-meta:<tag>

(see openms-meta/tags for valid values for <tag>)

package openms-thirdparty

Versions

2.5.0-4,  2.5.0-3,  2.5.0-2,  2.5.0-1,  2.5.0-0

Depends

• bumbershoot 3_0_11579

• comet-ms 2016013

• crux-toolkit 3.2

• fido 1.0

• gnuplot

• luciphor2 2018_06_28

• msgf_plus 2017.07.21

• omssa 2.1.9

• openms 2.5.0 h463af6b_4

• pepnovo 20101117

• percolator 3.4

• sirius-csifingerid 4.0.1

• thermorawfileparser 1.2.3

• xtandem 15.12.15.2

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install openms-thirdparty

and update with:

conda update openms-thirdparty

or use the docker container:

docker pull quay.io/biocontainers/openms-thirdparty:<tag>

(see openms-thirdparty/tags for valid values for <tag>)

package pyopenms

Versions

2.5.0-4,  2.5.0-3,  2.5.0-2,  2.5.0-1,  2.5.0-0,  2.4.0-3,  2.4.0-0

Depends

• boost >=1.70.0,<1.70.1.0a0

• bzip2 >=1.0.8,<2.0a0

• coinmp >=1.8.4,<1.9.0a0

• eigen >=3.3.7,<3.4.0a0

• glpk >=4.65,<4.66.0a0

• hdf5 >=1.10.5,<1.10.6.0a0

• hdf5 >=1.10.5,<1.11.0a0

• libgcc-ng >=7.5.0

• libopenms 2.5.0 h463af6b_4

• libstdcxx-ng >=7.5.0

• libsvm >=3.21,<3.22.0a0

• numpy

• python >=2.7,<2.8.0a0 *_cpython

• python_abi 2.7.* *_cp27mu

• qt >=5.12.5,<5.13.0a0

• sqlite >=3.32.3,<4.0a0

• xerces-c >=3.2.2,<3.2.3.0a0

• zlib >=1.2.11,<1.3.0a0

Required By

• easypqp

• diapysef

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install pyopenms

and update with:

conda update pyopenms

or use the docker container:

docker pull quay.io/biocontainers/pyopenms:<tag>

(see pyopenms/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/openms-meta/README.html)