recipe opfi

A package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics datasets.

Homepage:

https://github.com/wilkelab/Opfi

License:

MIT / MIT

Recipe:

/opfi/meta.yaml

package opfi

Versions:

0.1.2-0,  0.1.1-0

Depends:

• biopython >=1.76

• blast >=2.9.0

• diamond >=0.9.24

• dna_features_viewer >=3.0.1

• genericrepeatfinder >=1.0

• hypothesis >=5.1.1

• matplotlib-base >=3.2.1

• mmseqs2 >=13.45111

• more-itertools >=8.4.0

• parasail-python >=1.2

• piler-cr >=1.06

• pytest >=5.3.2

• python >=3.7

• pyyaml >=5.4

Required By:

• mgca

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install opfi

and update with:

conda update opfi

or use the docker container:

docker pull quay.io/biocontainers/opfi:<tag>

(see opfi/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/opfi/README.html)