recipe opfi

A package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics datasets.

Homepage:

https://github.com/wilkelab/Opfi

License:

MIT / MIT

Recipe:

/opfi/meta.yaml

package opfi

versions:

0.1.2-0,  0.1.1-0

depends biopython:

>=1.76

depends blast:

>=2.9.0

depends diamond:

>=0.9.24

depends dna_features_viewer:

>=3.0.1

depends genericrepeatfinder:

>=1.0

depends hypothesis:

>=5.1.1

depends matplotlib-base:

>=3.2.1

depends mmseqs2:

>=13.45111

depends more-itertools:

>=8.4.0

depends parasail-python:

>=1.2

depends piler-cr:

>=1.06

depends pytest:

>=5.3.2

depends python:

>=3.7

depends pyyaml:

>=5.4

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install opfi

and update with::

   mamba update opfi

To create a new environment, run:

mamba create --name myenvname opfi

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/opfi:<tag>

(see `opfi/tags`_ for valid values for ``<tag>``)

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