recipe optimir

Integrating genetic variations in miRNA alignment

Homepage

https://github.com/FlorianThibord/OptimiR

License

GPL-3

Recipe

/optimir/meta.yaml

Links

doi: 10.1261/rna.069708.118

package optimir

Versions

1.0-1,  1.0-0

Depends

• biopython

• bowtie2

• cutadapt

• pysam

• python

• samtools

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install optimir

and update with:

conda update optimir

or use the docker container:

docker pull quay.io/biocontainers/optimir:<tag>

(see optimir/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/optimir/README.html)