recipe optimir

Integrating genetic variations in miRNA alignment

Homepage:

https://github.com/FlorianThibord/OptimiR

License:

GPL-3

Recipe:

/optimir/meta.yaml

Links:

doi: 10.1261/rna.069708.118

package optimir

Versions:

1.2-0,  1.1-0,  1.0-1,  1.0-0

Depends:

• biopython

• bowtie2

• cutadapt

• pysam

• python

• samtools

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install optimir

and update with:

conda update optimir

or use the docker container:

docker pull quay.io/biocontainers/optimir:<tag>

(see optimir/tags for valid values for <tag>)

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Link to this page

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