recipe orthofinder

Accurate inference of orthogroups, orthologues, gene trees and rooted species tree made easy!

Homepage:

https://github.com/davidemms/OrthoFinder

License:

GPLv3

Recipe:

/orthofinder/meta.yaml

package orthofinder

Versions:

2.5.4-0,  2.5.3-0,  2.5.2-1,  2.5.2-0,  2.5.1-0,  2.4.1-1,  2.4.1-0,  2.4.0-1,  2.4.0-0, 

2.5.4-0,  2.5.3-0,  2.5.2-1,  2.5.2-0,  2.5.1-0,  2.4.1-1,  2.4.1-0,  2.4.0-1,  2.4.0-0,  2.3.12-0,  2.3.11-1,  2.3.11-0,  2.3.10-0,  2.3.8-2,  2.3.8-1,  2.3.8-0,  2.3.3-1,  2.3.3-0,  2.2.7-0,  2.2.6-0,  2.2.1-0,  2.2.0-0,  2.1.2-1,  2.1.2-0,  1.1.10-0,  1.1.8-0,  1.1.4-0,  1.1.2-0

Depends:

• blast

• bzip2

• diamond

• fastme

• fasttree

• iqtree

• mafft

• mcl

• mmseqs2

• muscle

• python >=2.7

• raxml

• raxml-ng

• scipy

Required By:

• pgcgap

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install orthofinder

and update with:

conda update orthofinder

or use the docker container:

docker pull quay.io/biocontainers/orthofinder:<tag>

(see orthofinder/tags for valid values for <tag>)

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