- recipe orthoflow
Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes.
- Homepage:
- Documentation:
- License:
APACHE / Apache-2.0
- Recipe:
# Orthoflow - end-to-end phylogenomic inference
Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes.
For more information, visit the GitHub or the documentation page.
- package orthoflow¶
- versions:
0.3.4-0,0.3.1-0,0.3.0-0,0.2.0-0- depends appdirs:
>=1.4.4- depends biopython:
>=1.79.0- depends flask:
>=2.1.2- depends jinja2:
>=3.1.2- depends joblib:
>=1.2.0- depends pandas:
>=1.2.5,<2.0.0- depends phytest:
>=1.4.1- depends pulp:
2.7.0.*- depends pydot:
>=1.4.2- depends python:
>=3.8,<3.12- depends rich:
>=13.3.3- depends snakemake-minimal:
>=7.0.0- depends toml:
>=0.10.2- depends typer:
>=0.4.1- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install orthoflow and update with:: mamba update orthoflow
To create a new environment, run:
mamba create --name myenvname orthoflow
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/orthoflow:<tag> (see `orthoflow/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/orthoflow/README.html)
