recipe pacbio_falcon

A set of tools for fast aligning long reads for consensus and assembly

Homepage:

https://github.com/PacificBiosciences/FALCON

License:

Standard PacBio Open Source License

Recipe:

/pacbio_falcon/meta.yaml

package pacbio_falcon

versions:

052016-2,  052016-1,  052016-0

depends libgcc-ng:

>=7.3.0

depends networkx:

depends pypeflow:

depends python:

>=2.7,<2.8.0a0

depends rdfextras:

depends rdflib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pacbio_falcon

and update with::

   mamba update pacbio_falcon

To create a new environment, run:

mamba create --name myenvname pacbio_falcon

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/pacbio_falcon:<tag>

(see `pacbio_falcon/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

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