recipe paf2chain

convert PAF format to CHAIN format

Homepage:

https://github.com/AndreaGuarracino/paf2chain

License:

MIT / MIT

Recipe:

/paf2chain/meta.yaml

package paf2chain

versions:

0.1.1-0

depends libgcc:

>=13

depends libstdcxx:

>=13

requirements:

additional platforms:

linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install paf2chain

and update with::

   mamba update paf2chain

To create a new environment, run:

mamba create --name myenvname paf2chain

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/paf2chain:<tag>

(see `paf2chain/tags`_ for valid values for ``<tag>``)

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