recipe pairtools

CLI tools to process mapped Hi-C data

Homepage:

https://github.com/open2c/pairtools

Documentation:

http://pairtools.readthedocs.io/

License:

MIT / MIT

Recipe:

/pairtools/meta.yaml

package pairtools

Versions:

1.0.2-0,  1.0.1-0,  0.3.0-6,  0.3.0-5,  0.3.0-4,  0.3.0-3,  0.3.0-2,  0.3.0-1,  0.3.0-0, 

1.0.2-0,  1.0.1-0,  0.3.0-6,  0.3.0-5,  0.3.0-4,  0.3.0-3,  0.3.0-2,  0.3.0-1,  0.3.0-0,  0.2.2-0,  0.2.1-0,  0.2.0-0,  0.1.1-0

Depends:

• bioframe >=0.3.3

• click

• coreutils

• htslib

• libgcc-ng >=12

• libstdcxx-ng >=12

• lz4-c

• numpy >=1.21.6,<2.0a0

• pandas

• pbgzip

• pysam >=0.19

• python >=3.10,<3.11.0a0

• python_abi 3.10.* *_cp310

• pyyaml

• samtools

• scipy >=1.7

Required By:

• hitea

• pore-c

• hint

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install pairtools

and update with:

conda update pairtools

or use the docker container:

docker pull quay.io/biocontainers/pairtools:<tag>

(see pairtools/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pairtools/README.html)