- recipe pairtools
CLI tools to process mapped Hi-C data.
- Homepage:
- Documentation:
- License:
MIT / MIT
- Recipe:
- package pairtools¶
- versions:
1.1.2-0,1.1.0-3,1.1.0-2,1.1.0-1,1.1.0-0,1.0.3-0,1.0.2-1,1.0.2-0,1.0.1-0,1.1.2-0,1.1.0-3,1.1.0-2,1.1.0-1,1.1.0-0,1.0.3-0,1.0.2-1,1.0.2-0,1.0.1-0,0.3.0-6,0.3.0-5,0.3.0-4,0.3.0-3,0.3.0-2,0.3.0-1,0.3.0-0,0.2.2-0,0.2.1-0,0.2.0-0,0.1.1-0- depends bioframe:
>=0.3.3- depends click:
- depends coreutils:
- depends htslib:
- depends libgcc:
>=13- depends libstdcxx:
>=13- depends lz4-c:
- depends numpy:
>=1.22.4,<2.0a0- depends pandas:
- depends pbgzip:
- depends pysam:
>=0.19- depends pysam:
>=0.22.1,<0.23.0a0- depends python:
>=3.10,<3.11.0a0- depends python_abi:
3.10.* *_cp310- depends pyyaml:
- depends samtools:
- depends scipy:
>=1.7- requirements:
- additional platforms:
linux-aarch64
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install pairtools and update with:: mamba update pairtools
To create a new environment, run:
mamba create --name myenvname pairtools
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/pairtools:<tag> (see `pairtools/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/pairtools/README.html)
