recipe pairtools

CLI tools to process mapped Hi-C data

Homepage

https://github.com/open2c/pairtools

Documentation

http://pairtools.readthedocs.io/

License

MIT / MIT

Recipe

/pairtools/meta.yaml

package pairtools

Versions

0.3.0-5,  0.3.0-4,  0.3.0-3,  0.3.0-2,  0.3.0-1,  0.3.0-0,  0.2.2-0,  0.2.1-0,  0.2.0-0, 

0.3.0-5,  0.3.0-4,  0.3.0-3,  0.3.0-2,  0.3.0-1,  0.3.0-0,  0.2.2-0,  0.2.1-0,  0.2.0-0,  0.1.1-0

Depends

• click

• coreutils

• htslib

• libgcc-ng >=9.3.0

• lz4-c

• numpy >=1.17.5,<2.0a0

• pbgzip

• python >=3.6,<3.7.0a0

• python_abi 3.6.* *_cp36m

• samtools

Required By

• pore-c

• hitea

• hint

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install pairtools

and update with:

conda update pairtools

or use the docker container:

docker pull quay.io/biocontainers/pairtools:<tag>

(see pairtools/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pairtools/README.html)