recipe pal2nal

robust conversion of protein sequence alignments into the corresponding codon alignments

Homepage:

http://www.bork.embl.de/pal2nal/

License:

GPL / GPLv2.0

Recipe:

/pal2nal/meta.yaml

Links:

biotools: pal2nal

package pal2nal

(downloads) docker_pal2nal

versions:

14.1-3,  14.1-2,  14.1-1,  14.1-0,  14-0

depends perl:

>=5.32.1,<6.0a0 *_perl5

depends perl-getopt-long:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pal2nal

and update with::

   mamba update pal2nal

To create a new environment, run:

mamba create --name myenvname pal2nal

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/pal2nal:<tag>

(see `pal2nal/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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