recipe paml

A package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood.

Homepage:

https://evomics.org/resources/software/molecular-evolution-software/paml

Documentation:

https://github.com/abacus-gene/paml/wiki

Developer docs:

https://github.com/abacus-gene/paml

License:

GPL3 / GPL-3.0-or-later

Recipe:

/paml/meta.yaml

Links:

biotools: paml, doi: 10.1093/bioinformatics/13.5.555

package paml

versions:

4.10.9-1,  4.10.9-0,  4.10.7-2,  4.10.7-1,  4.10.7-0,  4.10.6-2,  4.10.6-1,  4.10.6-0,  4.9-7, 

4.10.9-1,  4.10.9-0,  4.10.7-2,  4.10.7-1,  4.10.7-0,  4.10.6-2,  4.10.6-1,  4.10.6-0,  4.9-7,  4.9-6,  4.9-5,  4.9-4,  4.9-3,  4.9-2,  4.9-1,  4.9-0

depends libgcc:

>=13

requirements:

additional platforms:

linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install paml

and update with::

   mamba update paml

To create a new environment, run:

mamba create --name myenvname paml

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/paml:<tag>

(see `paml/tags`_ for valid values for ``<tag>``)

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