recipe panacota

Large scale comparative genomics tools: annotate genomes, do pangenome, core/persistent genome, align core/persistent families, infer phylogenetic tree.

Homepage:

https://github.com/gem-pasteur/PanACoTA

Documentation:

https://aperrin.pages.pasteur.fr/pipeline_annotation/html-doc/

License:

AGPL / GNU Affero General Public v3

Recipe:

/panacota/meta.yaml

package panacota

Versions:

1.4.0-0,  1.3.1-0,  1.2.0-0,  1.1.0-0,  1.0.1.2-0

Depends:

• biopython >=1.60

• colorlog

• fastme

• fasttree >=2.1.10

• iqtree >=1.6.12

• mafft

• mash

• matplotlib-base >=2.0.0

• mmseqs2

• ncbi-genome-download >=0.3.0

• numpy >=1.11

• prodigal >=2.6.2

• progressbar2 >=3.18.0

• prokka 1.14.5

• python >=3.6

• quicktree

• scipy

• termcolor

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install panacota

and update with:

conda update panacota

or use the docker container:

docker pull quay.io/biocontainers/panacota:<tag>

(see panacota/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/panacota/README.html)