recipe panaroo

panaroo - an updated pipeline for pangenome investigation

Homepage:

https://gtonkinhill.github.io/panaroo

License:

MIT

Recipe:

/panaroo/meta.yaml

package panaroo

Versions:

1.3.3-0,  1.3.2-0,  1.3.0-0,  1.2.10-0,  1.2.9-0,  1.2.8-0,  1.2.7-0,  1.2.4-0,  1.2.3-0, 

1.3.3-0,  1.3.2-0,  1.3.0-0,  1.2.10-0,  1.2.9-0,  1.2.8-0,  1.2.7-0,  1.2.4-0,  1.2.3-0,  1.2.2-1,  1.2.2-0,  1.2.0-0,  1.1.2-0,  1.1.0-0,  1.0.0-0

Depends:

• biocode

• biopython

• cd-hit

• dendropy

• gffutils

• intbitset

• joblib

• mafft

• mash

• matplotlib-base

• mkl

• networkx

• numba

• numpy

• openmp

• plotly

• prank

• prokka

• python >=3

• python-edlib

• scikit-learn

• scipy

• tqdm

• zlib

Required By:

• pgcgap

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install panaroo

and update with:

conda update panaroo

or use the docker container:

docker pull quay.io/biocontainers/panaroo:<tag>

(see panaroo/tags for valid values for <tag>)

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