recipe pangu

CYP2D6 PGx caller for PacBio HiFi Data

Homepage:

https://github.com/PacificBiosciences/pangu

License:

BSD-3-Clause-Clear

Recipe:

/pangu/meta.yaml

package pangu

versions:

0.2.8-0,  0.2.7-0,  0.2.6-0,  0.2.5-0,  0.2.4-0,  0.2.2-0,  0.2.1-0

depends mappy:

>=2.24

depends numpy:

>=1.23.3

depends pandas:

>=1.5.0

depends pysam:

>=0.19.1

depends python:

>=3.9

depends pyyaml:

depends scikit-learn:

depends scipy:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pangu

and update with::

   mamba update pangu

To create a new environment, run:

mamba create --name myenvname pangu

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/pangu:<tag>

(see `pangu/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

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