recipe panphlan/1.2

PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition and in-vivo transcriptional activity of individual strains in metagenomic samples. PanPhlAn’s ability for strain-tracking and functional analysis of unknown pathogens makes it an efficient tool for culture-free infectious outbreak epidemiology and microbial population studies.

Homepage

https://bitbucket.org/CibioCM/panphlan

License

MIT / MIT License

Recipe

/panphlan/1.2/meta.yaml

package panphlan

(downloads) docker_panphlan

Versions

1.2-4, 1.2-3

Depends biopython

Depends bowtie2

>=2.0.0

Depends matplotlib

Depends numpy

Depends python

>=2.7,<2.8.0a0

Depends samtools

Depends setuptools

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install panphlan

and update with:

conda update panphlan

or use the docker container:

docker pull quay.io/biocontainers/panphlan:<tag>

(see panphlan/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/panphlan/README.html)