recipe panphlan

PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition and *in-vivo* transcriptional activity of individual strains in metagenomic samples.

Homepage

http://github.com/SegataLab/panphlan/

License

MIT / MIT

Recipe

/panphlan/meta.yaml

package panphlan

Versions

3.1-0,  3.0-0,  1.3-1,  1.3-0,  1.2-6,  1.2-5,  1.2-4,  1.2-3

Depends

• bowtie2 >=2.3.0

• numpy

• pandas

• python >=3.7

• samtools >=1.9

• scipy

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install panphlan

and update with:

conda update panphlan

or use the docker container:

docker pull quay.io/biocontainers/panphlan:<tag>

(see panphlan/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/panphlan/README.html)