recipe panx/1.6.0

Microbial pan-genome analysis and exploration tool



GNU General Public License v3.0



package panx

(downloads) docker_panx



depends biopython:

depends diamond:

depends ete2:

depends fasttree:

depends mafft:

depends mcl:

depends numpy:

depends pandas:

depends python:


depends raxml:

depends scipy:

depends treetime:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install panx

and update with::

   mamba update panx

To create a new environment, run:

mamba create --name myenvname panx

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `panx/tags`_ for valid values for ``<tag>``)

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