recipe parallel-virfinder

parallel-virfinder, split virfinder execution in chuncks

Homepage:

https://github.com/quadram-institute-bioscience/parallel-virfinder

License:

Apache 2.0

Recipe:

/parallel-virfinder/meta.yaml

package parallel-virfinder

versions:

0.3.1-0,  0.3.0-0,  0.2.0-0,  0.1.0-0

depends python:

>=3.6

depends r-virfinder:

1.1.*

depends rich:

depends seqfu:

>=1.14.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install parallel-virfinder

and update with::

   mamba update parallel-virfinder

To create a new environment, run:

mamba create --name myenvname parallel-virfinder

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/parallel-virfinder:<tag>

(see `parallel-virfinder/tags`_ for valid values for ``<tag>``)

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