recipe paraphase

HiFi-based caller for highly homologous genes

Homepage:

https://github.com/PacificBiosciences/paraphase

License:

BSD-3-Clause-Clear

Recipe:

/paraphase/meta.yaml

package paraphase

versions:

3.1.1-0,  3.1.0-0,  3.0.0-0,  2.2.3-0,  2.2.2-0,  2.2.1-0,  2.1.0-0,  2.0.0-0,  1.1.3-0

depends matplotlib-base:

depends networkx:

>=2.8.2

depends numpy:

>=1.16

depends pysam:

>=0.15.3

depends python:

>=3.8

depends pyyaml:

depends scipy:

>=1.2

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install paraphase

and update with::

   mamba update paraphase

To create a new environment, run:

mamba create --name myenvname paraphase

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/paraphase:<tag>

(see `paraphase/tags`_ for valid values for ``<tag>``)

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