recipe pargenes

A massively parallel tool for model selection and tree inference on thousands of genes

Homepage:

https://github.com/BenoitMorel/ParGenes

License:

GNU General Public License v3.

Recipe:

/pargenes/meta.yaml

Links:

doi: 10.1101/2020.02.28.969980

package pargenes

(downloads) docker_pargenes

versions:

1.2.0-0

depends libgcc-ng:

>=7.5.0

depends libstdcxx-ng:

>=7.5.0

depends openjdk:

depends openmpi:

>=4.0.5,<4.1.0a0

depends python:

>=2.7,<2.8.0a0

depends python_abi:

2.7.* *_cp27mu

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pargenes

and update with::

   mamba update pargenes

To create a new environment, run:

mamba create --name myenvname pargenes

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/pargenes:<tag>

(see `pargenes/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pargenes/README.html)