recipe pash

A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massively parallel DNA sequencing

Homepage:

http://www.bioinformatics.bbsrc.ac.uk/projects/bismark/

License:

Unknown

Recipe:

/pash/meta.yaml

Links:

biotools: pash

package pash

(downloads) docker_pash

versions:

3.0.6.2-0

depends glib:

depends libgcc:

depends ruby:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pash

and update with::

   mamba update pash

To create a new environment, run:

mamba create --name myenvname pash

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/pash:<tag>

(see `pash/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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