recipe pauda

PAUDA is a new approach toward the problem of comparing DNA reads against a database of protein reference sequences that is applicable to very large datasets consisting of hundreds of millions or billions of reads.

Homepage:

https://ab.inf.uni-tuebingen.de/software/pauda

License:

GPL

Recipe:

/pauda/meta.yaml

package pauda

(downloads) docker_pauda

versions:

1.0.1-1,  1.0.1-0

depends bowtie2:

depends java-jdk:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pauda

and update with::

   mamba update pauda

To create a new environment, run:

mamba create --name myenvname pauda

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/pauda:<tag>

(see `pauda/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pauda/README.html)