recipe pb-assembly

Meta-package for Falcon/Unzip tool-suite (originally by Jason Chin)

Homepage:

https://github.com/PacificBiosciences/pbbioconda

License:

BSD 3-Clause Clear License

Recipe:

/pb-assembly/meta.yaml

package pb-assembly

Versions:

0.0.8-1,  0.0.8-0,  0.0.7-0,  0.0.6-7,  0.0.6-6,  0.0.6-5,  0.0.5-2,  0.0.5-1,  0.0.4-6, 

0.0.8-1,  0.0.8-0,  0.0.7-0,  0.0.6-7,  0.0.6-6,  0.0.6-5,  0.0.5-2,  0.0.5-1,  0.0.4-6,  0.0.4-5,  0.0.4-4,  0.0.4-3,  0.0.4-2,  0.0.3-2,  0.0.3-1,  0.0.2-0,  0.0.1-0,  0.0.0-8,  0.0.0-7,  0.0.0-6,  0.0.0-5,  0.0.0-4,  0.0.0-3

Depends:

• bedtools

• blasr

• bwa

• minimap2

• mummer4

• nim-falcon

• pb-dazzler

• pb-falcon >=2.2.2

• pb-falcon-phase

• pbgcpp

• pbmm2

• python

• racon

• samtools

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install pb-assembly

and update with:

conda update pb-assembly

or use the docker container:

docker pull quay.io/biocontainers/pb-assembly:<tag>

(see pb-assembly/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/pb-assembly/README.html)