recipe pb-assembly

Meta-package for Falcon/Unzip tool-suite (originally by Jason Chin)

Homepage

https://github.com/PacificBiosciences/pbbioconda

License

BSD 3-Clause Clear License

Recipe

/pb-assembly/meta.yaml

package pb-assembly

(downloads) docker_pb-assembly

Versions

0.0.6-5, 0.0.5-2, 0.0.5-1, 0.0.4-6, 0.0.4-5, 0.0.4-4, 0.0.4-3, 0.0.4-2, 0.0.3-2, 0.0.3-1, 0.0.2-0, 0.0.1-0, 0.0.0-8, 0.0.0-7, 0.0.0-6, 0.0.0-5, 0.0.0-4, 0.0.0-3

Depends bedtools

Depends blasr

Depends bwa

Depends minimap2

Depends mummer4

Depends nim-falcon

Depends pb-dazzler

Depends pb-falcon

>=0.3.0

Depends pbgcpp

Depends pbmm2

Depends python

>=3.6,<3.7.0a0

Depends racon

Depends samtools

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install pb-assembly

and update with:

conda update pb-assembly

or use the docker container:

docker pull quay.io/biocontainers/pb-assembly:<tag>

(see pb-assembly/tags for valid values for <tag>)