recipe pb-assembly

Meta-package for Falcon/Unzip tool-suite (originally by Jason Chin)



BSD 3-Clause Clear License



package pb-assembly

(downloads) docker_pb-assembly



depends bedtools:

depends blasr:

depends bwa:

depends minimap2:

depends mummer4:

depends nim-falcon:

depends pb-dazzler:

depends pb-falcon:


depends pb-falcon-phase:

depends pbgcpp:

depends pbmm2:

depends python:

depends racon:

depends samtools:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pb-assembly

and update with::

   mamba update pb-assembly

To create a new environment, run:

mamba create --name myenvname pb-assembly

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `pb-assembly/tags`_ for valid values for ``<tag>``)

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