recipe pbalign

Python wrapper for producing PBBAM valid alignments

Homepage

https://github.com/PacificBiosciences/pbalign

License

BSD-3-Clause-Clear

Recipe

/pbalign/meta.yaml

package pbalign

(downloads) docker_pbalign

Versions

0.3.2-0, 0.3.1-2, 0.3.1-1, 0.3.1-0

Depends blasr

>=5.3.2

Depends pbbam

>=0.18.0

Depends pbcommand

>=1.1.1

Depends pbcore

>=1.6.5

Depends pysam

>=0.15.1

Depends python

>=2.7,<2.8.0a0

Depends samtools

>=1.6

Depends setuptools

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install pbalign

and update with:

conda update pbalign

or use the docker container:

docker pull quay.io/biocontainers/pbalign:<tag>

(see pbalign/tags for valid values for <tag>)