recipe pblat

blat with multi-threads support

Homepage

https://icebert.github.io/pblat

Developer docs

https://github.com/icebert/pblat

License

OTHER

Recipe

/pblat/meta.yaml

Links

biotools: pblat, doi: 10.1186/s12859-019-2597-8

package pblat

(downloads) docker_pblat

Versions

2.5-02.4-02.3-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install pblat

and update with:

conda update pblat

or use the docker container:

docker pull quay.io/biocontainers/pblat:<tag>

(see pblat/tags for valid values for <tag>)

Notes

pblat is modified from blat, the licence is the same as blat. The source code and executables are freely available for academic, nonprofit and personal use. Commercial licensing information is available on the Kent Informatics website. To cite: Wang M & Kong L. pblat: a multithread blat algorithm speeding up aligning sequences to genomes. BMC Bioinformatics 2019, 20(1).