recipe peakachu

Peak calling tool for CLIP-seq data.

Homepage:

https://github.com/tbischler/PEAKachu

License:

ISCL

Recipe:

/peakachu/meta.yaml

package peakachu

Versions:

0.2.0-2,  0.2.0-1,  0.2.0-0,  0.1.0-5,  0.1.0-4,  0.1.0-3,  0.1.0-1,  0.1.0-0

Depends:

• bcbio-gff >=0.6.6

• bioconductor-deseq2 >=1.18.1

• bioconductor-edger

• biopython >=1.77

• blockbuster

• libgcc-ng >=10.3.0

• matplotlib-base >=3.3.1

• numexpr >=2.7.0

• pandas >=0.25.1

• pysam >=0.16.0.1

• python >=3.6,<3.7.0a0

• python_abi 3.6.* *_cp36m

• rpy2

• statsmodels >=0.10.1

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install peakachu

and update with:

conda update peakachu

or use the docker container:

docker pull quay.io/biocontainers/peakachu:<tag>

(see peakachu/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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