recipe peakhood

Individual site context extraction for CLIP-Seq peak regions






package peakhood

(downloads) docker_peakhood



depends bedtools:

depends markdown:

depends python:


depends samtools:

depends seaborn:

depends ucsc-twobitinfo:

depends ucsc-twobittofa:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install peakhood

and update with::

   mamba update peakhood

To create a new environment, run:

mamba create --name myenvname peakhood

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `peakhood/tags`_ for valid values for ``<tag>``)

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