recipe pegasusio

PegasusIO is the IO package for Pegasus.

Homepage:

https://github.com/lilab-bcb/pegasusio

Documentation:

https://pegasusio.readthedocs.io

License:

BSD / BSD-3-Clause

Recipe:

/pegasusio/meta.yaml

package pegasusio

versions:

0.10.0-0,  0.9.1-2,  0.9.1-1,  0.9.1-0,  0.9.0-2,  0.9.0-1,  0.9.0-0,  0.8.1-0,  0.8.0-2, 

0.10.0-0,  0.9.1-2,  0.9.1-1,  0.9.1-0,  0.9.0-2,  0.9.0-1,  0.9.0-0,  0.8.1-0,  0.8.0-2,  0.8.0-1,  0.8.0-0,  0.7.1-1,  0.7.1-0,  0.7.0-1,  0.7.0-0,  0.6.2-0,  0.6.1-0,  0.5.1.post1-2,  0.5.1.post1-1,  0.5.1.post1-0,  0.5.1-1,  0.5.1-0,  0.5.0-0,  0.4.1-0,  0.4.0.post1-0,  0.4.0-0,  0.3.1.post2-0,  0.3.1.post1-0,  0.3.1-0,  0.3.0-0,  0.2.14-0,  0.2.13-0,  0.2.12.post1-0,  0.2.12-0,  0.2.11-0,  0.2.10-1,  0.2.10-0,  0.2.9-0,  0.2.8.post2-0

depends anndata:

>=0.7

depends docopt:

depends h5py:

>=3.0.0

depends libgcc:

>=13

depends loompy:

depends natsort:

depends numpy:

depends pandas:

>=1.2.0

depends pillow:

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends scipy:

depends zarr:

<=2.18.7

requirements:

additional platforms:

linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install pegasusio

and update with::

   mamba update pegasusio

To create a new environment, run:

mamba create --name myenvname pegasusio

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/pegasusio:<tag>

(see `pegasusio/tags`_ for valid values for ``<tag>``)

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