- recipe perl-atlas-modules
A package exporting in-house perl functions and classes used in the data production of EMBL-EBI Expression Atlas data.
- Homepage:
https://github.com/ebi-gene-expression-group/perl-atlas-modules
- License:
APACHE / Apache Software License
- Recipe:
- package perl-atlas-modules¶
- Versions:
0.3.1-5,0.3.1-4,0.3.1-3,0.3.1-2,0.3.1-0,0.3.0-0,0.2.0-0,0.1.6-2,0.1.6-1,0.3.1-5,0.3.1-4,0.3.1-3,0.3.1-2,0.3.1-0,0.3.0-0,0.2.0-0,0.1.6-2,0.1.6-1,0.1.6-0- Depends:
on libgcc-ng
>=12on libstdcxx-ng
>=12on perl
5.26.2.*on perl-algorithm-diff
on perl-archive-extract
on perl-archive-zip
on perl-array-compare
on perl-array-utils
on perl-base
on perl-capture-tiny
on perl-carp
on perl-carp-clan
on perl-class-accessor
on perl-class-std
on perl-clone
on perl-data-compare
on perl-data-dumper
on perl-date-manip
on perl-datetime
on perl-datetime-format-strptime
on perl-dbd-mysql
on perl-dbd-pg
on perl-dbi
<1.642on perl-devel-symdump
on perl-extutils-cbuilder
on perl-extutils-config
on perl-extutils-helpers
on perl-extutils-installpaths
on perl-file-spec
on perl-graphviz
on perl-io-scalar
on perl-io-stringy
on perl-ipc-cmd
on perl-ipc-run3
on perl-json
on perl-json-parse
on perl-list-moreutils
on perl-log-log4perl
on perl-lwp-protocol-https
on perl-lwp-simple
on perl-mailtools
on perl-mime-lite
on perl-module-build
on perl-module-build-tiny
on perl-module-pluggable
on perl-moose
on perl-moosex-types
on perl-params-coerce
on perl-params-validate
on perl-parse-recdescent
on perl-path-tiny
on perl-readonly
on perl-scalar-list-utils
on perl-spiffy
on perl-sub-exporter-formethods
on perl-sub-uplevel
on perl-test-exception
on perl-test-inter
on perl-test-needs
on perl-test-nowarnings
on perl-test-pod
on perl-test-pod-coverage
on perl-test-warn
on perl-text-csv
on perl-text-csv_xs
on perl-text-diff
on perl-tie-ixhash
on perl-timedate
on perl-uri
on perl-xml-parser
on perl-xml-simple
on perl-xml-writer
on perl-yaml
- Additional platforms:
Installation¶
You need a conda-compatible package manager (currently either pixi, conda, or micromamba) and the Bioconda channel already activated (see Usage). Below, we show how to install with either pixi or conda (for micromamba and mamba, commands are essentially the same as with conda).
Pixi¶
With pixi installed and the Bioconda channel set up (see Usage), to install globally, run:
pixi global install perl-atlas-modules
to add into an existing workspace instead, run:
pixi add perl-atlas-modules
In the latter case, make sure to first add bioconda and conda-forge to the channels considered by the workspace:
pixi workspace channel add conda-forge
pixi workspace channel add bioconda
Conda¶
With conda installed and the Bioconda channel set up (see Usage), to install into an existing and activated environment, run:
conda install perl-atlas-modules
Alternatively, to install into a new environment, run:
conda create -n envname perl-atlas-modules
with envname being the name of the desired environment.
Container¶
Alternatively, every Bioconda package is available as a container image for usage with your preferred container runtime. For e.g. docker, run:
docker pull quay.io/biocontainers/perl-atlas-modules:<tag>
(see perl-atlas-modules/tags for valid values for <tag>).
Integrated deployment¶
Finally, note that many scientific workflow management systems directly integrate both conda and container based software deployment. Thus, workflow steps can be often directly annotated to use the package, leading to automatic deployment by the respective workflow management system, thereby improving reproducibility and transparency. Check the documentation of your workflow management system to find out about the integration.
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/perl-atlas-modules/README.html)
