recipe perl-atlas-modules

A package exporting in-house perl functions and classes used in the data production of EMBL-EBI Expression Atlas data.

Homepage:

https://github.com/ebi-gene-expression-group/perl-atlas-modules

License:

APACHE / Apache Software License

Recipe:

/perl-atlas-modules/meta.yaml

package perl-atlas-modules

versions:

0.3.1-5,  0.3.1-4,  0.3.1-3,  0.3.1-2,  0.3.1-0,  0.3.0-0,  0.2.0-0,  0.1.6-2,  0.1.6-1, 

0.3.1-5,  0.3.1-4,  0.3.1-3,  0.3.1-2,  0.3.1-0,  0.3.0-0,  0.2.0-0,  0.1.6-2,  0.1.6-1,  0.1.6-0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends perl:

5.26.2.*

depends perl-algorithm-diff:

depends perl-archive-extract:

depends perl-archive-zip:

depends perl-array-compare:

depends perl-array-utils:

depends perl-base:

depends perl-capture-tiny:

depends perl-carp:

depends perl-carp-clan:

depends perl-class-accessor:

depends perl-class-std:

depends perl-clone:

depends perl-data-compare:

depends perl-data-dumper:

depends perl-date-manip:

depends perl-datetime:

depends perl-datetime-format-strptime:

depends perl-dbd-mysql:

depends perl-dbd-pg:

depends perl-dbi:

<1.642

depends perl-devel-symdump:

depends perl-extutils-cbuilder:

depends perl-extutils-config:

depends perl-extutils-helpers:

depends perl-extutils-installpaths:

depends perl-file-spec:

depends perl-graphviz:

depends perl-io-scalar:

depends perl-io-stringy:

depends perl-ipc-cmd:

depends perl-ipc-run3:

depends perl-json:

depends perl-json-parse:

depends perl-list-moreutils:

depends perl-log-log4perl:

depends perl-lwp-protocol-https:

depends perl-lwp-simple:

depends perl-mailtools:

depends perl-mime-lite:

depends perl-module-build:

depends perl-module-build-tiny:

depends perl-module-pluggable:

depends perl-moose:

depends perl-moosex-types:

depends perl-params-coerce:

depends perl-params-validate:

depends perl-parse-recdescent:

depends perl-path-tiny:

depends perl-readonly:

depends perl-scalar-list-utils:

depends perl-spiffy:

depends perl-sub-exporter-formethods:

depends perl-sub-uplevel:

depends perl-test-exception:

depends perl-test-inter:

depends perl-test-needs:

depends perl-test-nowarnings:

depends perl-test-pod:

depends perl-test-pod-coverage:

depends perl-test-warn:

depends perl-text-csv:

depends perl-text-csv_xs:

depends perl-text-diff:

depends perl-tie-ixhash:

depends perl-timedate:

depends perl-uri:

depends perl-xml-parser:

depends perl-xml-simple:

depends perl-xml-writer:

depends perl-yaml:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install perl-atlas-modules

and update with::

   mamba update perl-atlas-modules

To create a new environment, run:

mamba create --name myenvname perl-atlas-modules

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/perl-atlas-modules:<tag>

(see `perl-atlas-modules/tags`_ for valid values for ``<tag>``)

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