recipe perl-bio-db-hts

Read files using HTSlib including BAM/CRAM, Tabix and BCF database files

Homepage:

https://metacpan.org/pod/Bio::DB::HTS

License:

Apache v2.0

Recipe:

/perl-bio-db-hts/meta.yaml

package perl-bio-db-hts

Versions:

3.01-7,  3.01-6,  3.01-5,  3.01-4,  3.01-3,  3.01-2,  3.01-1,  3.01-0,  2.7-3, 

3.01-7,  3.01-6,  3.01-5,  3.01-4,  3.01-3,  3.01-2,  3.01-1,  3.01-0,  2.7-3,  2.7-2,  2.7-1,  2.7-0,  2.4-0

Depends:

• htslib >=1.17,<1.18.0a0

• libgcc-ng >=12

• libzlib >=1.2.13,<1.3.0a0

• perl >=5.32.1,<5.33.0a0 *_perl5

• perl-bioperl

• perl-module-build 0.4232.*

• zlib >=1.2.13,<1.3.0a0

Required By:

• hla-la

• ensembl-vep

• brass

• perl-pcap

• perl-sanger-cgp-vagrent

• perl-ensembl-variation

• viewbs

• hla-asm

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install perl-bio-db-hts

and update with:

conda update perl-bio-db-hts

or use the docker container:

docker pull quay.io/biocontainers/perl-bio-db-hts:<tag>

(see perl-bio-db-hts/tags for valid values for <tag>)

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