recipe perl-bio-db-hts

Read files using HTSlib including BAM/CRAM, Tabix and BCF database files

Homepage:

https://metacpan.org/pod/Bio::DB::HTS

License:

Apache v2.0

Recipe:

/perl-bio-db-hts/meta.yaml

package perl-bio-db-hts

versions:

3.01-11,  3.01-10,  3.01-9,  3.01-8,  3.01-7,  3.01-6,  3.01-5,  3.01-4,  3.01-3, 

3.01-11,  3.01-10,  3.01-9,  3.01-8,  3.01-7,  3.01-6,  3.01-5,  3.01-4,  3.01-3,  3.01-2,  3.01-1,  3.01-0,  2.7-3,  2.7-2,  2.7-1,  2.7-0,  2.4-0

depends htslib:

>=1.21,<1.22.0a0

depends libgcc:

>=13

depends libzlib:

>=1.2.13,<2.0a0

depends perl:

>=5.32.1,<5.33.0a0 *_perl5

depends perl-bioperl:

depends perl-module-build:

0.4234.*

depends zlib:

requirements:

additional platforms:

linux-aarch64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install perl-bio-db-hts

and update with::

   mamba update perl-bio-db-hts

To create a new environment, run:

mamba create --name myenvname perl-bio-db-hts

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/perl-bio-db-hts:<tag>

(see `perl-bio-db-hts/tags`_ for valid values for ``<tag>``)

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