- recipe perl-bio-eutilities
Webagent which interacts with and retrieves data from NCBI eUtils.
- Homepage:
- License:
perl_5
- Recipe:
- package perl-bio-eutilities¶
- Versions:
1.77-0,1.75-4,1.75-2,1.75-0- Depends:
on perl
>=5.32.1,<6.0a0 *_perl5on perl-bio-asn1-entrezgene
on perl-bioperl
on perl-capture-tiny
on perl-class-data-inheritable
on perl-data-stag
on perl-devel-stacktrace
on perl-exception-class
on perl-sub-uplevel
on perl-test-deep
on perl-test-differences
on perl-test-exception
on perl-test-most
on perl-test-simple
on perl-test-warn
on perl-text-csv
on perl-text-diff
on perl-xml-namespacesupport
on perl-xml-sax
on perl-xml-sax-base
on perl-xml-sax-expat
on perl-xml-simple
- Additional platforms:
Installation¶
You need a conda-compatible package manager (currently either pixi, conda, or micromamba) and the Bioconda channel already activated (see Usage). Below, we show how to install with either pixi or conda (for micromamba and mamba, commands are essentially the same as with conda).
Pixi¶
With pixi installed and the Bioconda channel set up (see Usage), to install globally, run:
pixi global install perl-bio-eutilities
to add into an existing workspace instead, run:
pixi add perl-bio-eutilities
In the latter case, make sure to first add bioconda and conda-forge to the channels considered by the workspace:
pixi workspace channel add conda-forge
pixi workspace channel add bioconda
Conda¶
With conda installed and the Bioconda channel set up (see Usage), to install into an existing and activated environment, run:
conda install perl-bio-eutilities
Alternatively, to install into a new environment, run:
conda create -n envname perl-bio-eutilities
with envname being the name of the desired environment.
Container¶
Alternatively, every Bioconda package is available as a container image for usage with your preferred container runtime. For e.g. docker, run:
docker pull quay.io/biocontainers/perl-bio-eutilities:<tag>
(see perl-bio-eutilities/tags for valid values for <tag>).
Integrated deployment¶
Finally, note that many scientific workflow management systems directly integrate both conda and container based software deployment. Thus, workflow steps can be often directly annotated to use the package, leading to automatic deployment by the respective workflow management system, thereby improving reproducibility and transparency. Check the documentation of your workflow management system to find out about the integration.
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/perl-bio-eutilities/README.html)
