- recipe perl-bio-viennangs
A Perl distribution for Next-Generation Sequencing (NGS) data analysis
- Homepage:
- License:
perl_5
- Recipe:
- package perl-bio-viennangs¶
- Versions:
0.19.2-1,0.19.2-0,v0.19.2-5,v0.19-1,v0.18-2,v0.18-1,v0.18-0,v0.16-0- Depends:
on bedtools
>=2.24on perl
>=5.32.1,<6.0a0 *_perl5on perl-bio-procedural
on perl-bio-samtools
on perl-bioperl
on perl-carp
on perl-constant
on perl-data-dumper
on perl-exporter
on perl-file-find
on perl-file-path
on perl-file-share
on perl-file-slurp
on perl-file-temp
on perl-findbin
on perl-getopt-long
on perl-ipc-cmd
on perl-lib
on perl-math-round
on perl-moose
on perl-moosex-clone
on perl-namespace-autoclean
on perl-params-coerce
on perl-path-class
on perl-perlio-gzip
on perl-pod-usage
on perl-posix
on perl-scalar-list-utils
on perl-template-toolkit
on perl-test-deep
on perl-test-file-contents
on perl-test-files
on perl-tie-hash-indexed
on ucsc-bedgraphtobigwig
on ucsc-bedtobigbed
on ucsc-fatotwobit
on ucsc-fetchchromsizes
- Additional platforms:
Installation¶
You need a conda-compatible package manager (currently either pixi, conda, or micromamba) and the Bioconda channel already activated (see Usage). Below, we show how to install with either pixi or conda (for micromamba and mamba, commands are essentially the same as with conda).
Pixi¶
With pixi installed and the Bioconda channel set up (see Usage), to install globally, run:
pixi global install perl-bio-viennangs
to add into an existing workspace instead, run:
pixi add perl-bio-viennangs
In the latter case, make sure to first add bioconda and conda-forge to the channels considered by the workspace:
pixi workspace channel add conda-forge
pixi workspace channel add bioconda
Conda¶
With conda installed and the Bioconda channel set up (see Usage), to install into an existing and activated environment, run:
conda install perl-bio-viennangs
Alternatively, to install into a new environment, run:
conda create -n envname perl-bio-viennangs
with envname being the name of the desired environment.
Container¶
Alternatively, every Bioconda package is available as a container image for usage with your preferred container runtime. For e.g. docker, run:
docker pull quay.io/biocontainers/perl-bio-viennangs:<tag>
(see perl-bio-viennangs/tags for valid values for <tag>).
Integrated deployment¶
Finally, note that many scientific workflow management systems directly integrate both conda and container based software deployment. Thus, workflow steps can be often directly annotated to use the package, leading to automatic deployment by the respective workflow management system, thereby improving reproducibility and transparency. Check the documentation of your workflow management system to find out about the integration.
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/perl-bio-viennangs/README.html)
