recipe perl-bio-viennangs

A Perl distribution for Next-Generation Sequencing (NGS) data analysis

Homepage:

http://metacpan.org/pod/Bio::ViennaNGS

License:

perl_5

Recipe:

/perl-bio-viennangs/meta.yaml

package perl-bio-viennangs

versions:

0.19.2-1,  0.19.2-0,  v0.19.2-5,  v0.19-1,  v0.18-2,  v0.18-1,  v0.18-0,  v0.16-0

depends bedtools:

>=2.24

depends perl:

>=5.32.1,<6.0a0 *_perl5

depends perl-bio-procedural:

depends perl-bio-samtools:

depends perl-bioperl:

depends perl-carp:

depends perl-constant:

depends perl-data-dumper:

depends perl-exporter:

depends perl-file-find:

depends perl-file-path:

depends perl-file-share:

depends perl-file-slurp:

depends perl-file-temp:

depends perl-findbin:

depends perl-getopt-long:

depends perl-ipc-cmd:

depends perl-lib:

depends perl-math-round:

depends perl-moose:

depends perl-moosex-clone:

depends perl-namespace-autoclean:

depends perl-params-coerce:

depends perl-path-class:

depends perl-perlio-gzip:

depends perl-pod-usage:

depends perl-posix:

depends perl-scalar-list-utils:

depends perl-template-toolkit:

depends perl-test-deep:

depends perl-test-file-contents:

depends perl-test-files:

depends perl-tie-hash-indexed:

depends ucsc-bedgraphtobigwig:

depends ucsc-bedtobigbed:

depends ucsc-fatotwobit:

depends ucsc-fetchchromsizes:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install perl-bio-viennangs

and update with::

   mamba update perl-bio-viennangs

To create a new environment, run:

mamba create --name myenvname perl-bio-viennangs

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/perl-bio-viennangs:<tag>

(see `perl-bio-viennangs/tags`_ for valid values for ``<tag>``)

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