recipe perl-estscan2/2.1

Detects coding regions in DNA sequences even if they are of low quality. ESTScan.pm contains the Perl part of the code that reads in the matrices file. The C code that does the actual computation is located in estscan.c.

Homepage:

http://estscan.sourceforge.net

License:

open source

Recipe:

/perl-estscan2/2.1/meta.yaml

package perl-estscan2

versions:

2.1-2,  2.1-1,  2.1-0

depends perl:

>=5.26.2,<5.27.0a0

depends perl-btlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install perl-estscan2

and update with::

   mamba update perl-estscan2

To create a new environment, run:

mamba create --name myenvname perl-estscan2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/perl-estscan2:<tag>

(see `perl-estscan2/tags`_ for valid values for ``<tag>``)

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