recipe perl-gfacs

gFACs is a filtering, analysis, and conversion tool to unify genome annotations across alignment and gene prediction frameworks.

Homepage:

https://gitlab.com/PlantGenomicsLab/gFACs

License:

GPL / GNU General Public License v3 (GPL-3.0)

Recipe:

/perl-gfacs/meta.yaml

Links:

doi: 10.1016/j.gpb.2019.04.002

package perl-gfacs

(downloads) docker_perl-gfacs

versions:

1.1.1-1,  1.1.1-0

depends perl-bioperl:

>=1.7.2

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install perl-gfacs

and update with::

   mamba update perl-gfacs

To create a new environment, run:

mamba create --name myenvname perl-gfacs

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/perl-gfacs:<tag>

(see `perl-gfacs/tags`_ for valid values for ``<tag>``)

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Link to this page

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