- recipe perl-hpc-runner-command/3.2.13
Create composable bioinformatics hpc analyses.
- Homepage:
- License:
perl_5
- Recipe:
- package perl-hpc-runner-command¶
- Versions:
3.2.13-2,3.2.13-1,3.2.13-0,3.2.11-0,3.2.10-0,3.2.9-0,3.2.8-0,3.2.7-0,3.2.6-0,3.2.13-2,3.2.13-1,3.2.13-0,3.2.11-0,3.2.10-0,3.2.9-0,3.2.8-0,3.2.7-0,3.2.6-0,3.2.5-0,3.2.4-0,3.2.2-0,3.2.0-1,3.2.0-0,3.1.4-1,3.1.4-0,3.1.1-0,3.0.1-1- Depends:
on perl
>=5.32.1,<6.0a0 *_perl5on perl-algorithm-dependency
on perl-app-cpanminus
on perl-archive-tar
on perl-archive-tar-wrapper
on perl-array-compare
on perl-biosails
on perl-data-uuid
on perl-datetime
on perl-dbm-deep
on perl-file-find-rule
on perl-file-homedir
on perl-file-path
on perl-file-slurp
on perl-git-wrapper
on perl-git-wrapper-plus
on perl-io-interactive
on perl-json
on perl-json-xs
on perl-list-moreutils
>=0.428on perl-list-uniq
on perl-log-log4perl
on perl-mce
on perl-moose
on perl-moosex-app
on perl-moosex-app-role-log4perl
on perl-moosex-getopt
on perl-moosex-nonmoose
on perl-moosex-types
on perl-moosex-types-path-tiny
on perl-namespace-autoclean
on perl-number-compare
on perl-params-validate
on perl-path-tiny
on perl-slurp
on perl-sort-versions
on perl-string-approx
on perl-template-toolkit
on perl-text-ansitable
on perl-text-asciitable
on perl-try-tiny
on perl-type-tiny
on perl-version-next
on perl-yaml
on perl-yaml-libyaml
- Additional platforms:
Installation¶
You need a conda-compatible package manager (currently either pixi, conda, or micromamba) and the Bioconda channel already activated (see Usage). Below, we show how to install with either pixi or conda (for micromamba and mamba, commands are essentially the same as with conda).
Pixi¶
With pixi installed and the Bioconda channel set up (see Usage), to install globally, run:
pixi global install perl-hpc-runner-command
to add into an existing workspace instead, run:
pixi add perl-hpc-runner-command
In the latter case, make sure to first add bioconda and conda-forge to the channels considered by the workspace:
pixi workspace channel add conda-forge
pixi workspace channel add bioconda
Conda¶
With conda installed and the Bioconda channel set up (see Usage), to install into an existing and activated environment, run:
conda install perl-hpc-runner-command
Alternatively, to install into a new environment, run:
conda create -n envname perl-hpc-runner-command
with envname being the name of the desired environment.
Container¶
Alternatively, every Bioconda package is available as a container image for usage with your preferred container runtime. For e.g. docker, run:
docker pull quay.io/biocontainers/perl-hpc-runner-command:<tag>
(see perl-hpc-runner-command/tags for valid values for <tag>).
Integrated deployment¶
Finally, note that many scientific workflow management systems directly integrate both conda and container based software deployment. Thus, workflow steps can be often directly annotated to use the package, leading to automatic deployment by the respective workflow management system, thereby improving reproducibility and transparency. Check the documentation of your workflow management system to find out about the integration.
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/perl-hpc-runner-command/README.html)
