recipe perl-pcap

NGS reference implementations and helper code for the IGCG/TCGA Pan-Cancer Analysis Project

Homepage

https://github.com/ICGC-TCGA-PanCancer/PCAP-core

License

GPLv3

Recipe

/perl-pcap/meta.yaml

package perl-pcap

(downloads) docker_perl-pcap

Versions

3.5.2-0, 1.11.1-2, 1.11.1-1, 1.11.1-0

Depends libgcc-ng

>=7.3.0

Depends perl

>=5.26.2,<5.26.3.0a0

Depends perl-bio-db-hts

Depends perl-bio-samtools

Depends perl-bioperl

Depends perl-encode-locale

Depends perl-gd

Depends perl-ipc-system-simple

Depends perl-lwp-simple

Depends perl-sanger-cgp-vcf

Depends perl-xml-parser

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install perl-pcap

and update with:

conda update perl-pcap

or use the docker container:

docker pull quay.io/biocontainers/perl-pcap:<tag>

(see perl-pcap/tags for valid values for <tag>)