recipe perl-retroseq

RetroSeq: discovery and genotyping of TEVs from reads in BAM format.

Homepage:

https://github.com/tk2/RetroSeq

License:

GPL

Recipe:

/perl-retroseq/meta.yaml

package perl-retroseq

versions:

1.5-3,  1.5-2,  1.5-1,  1.5-0

depends bcftools:

depends bedtools:

depends exonerate:

2.2.0

depends ncurses:

depends perl:

>=5.32.1,<6.0a0 *_perl5

depends perl-carp:

depends samtools:

0.1.19

depends zlib:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install perl-retroseq

and update with::

   mamba update perl-retroseq

To create a new environment, run:

mamba create --name myenvname perl-retroseq

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/perl-retroseq:<tag>

(see `perl-retroseq/tags`_ for valid values for ``<tag>``)

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