recipe perl-sanger-cgp-vagrent

A toolset for comparing genomic variants to reference genome annotation to identify potential biological consequences.

Homepage:

https://github.com/cancerit/VAGrENT

License:

GPL / GPL3

Recipe:

/perl-sanger-cgp-vagrent/meta.yaml

package perl-sanger-cgp-vagrent

Versions:

3.7.0-2,  3.7.0-1,  3.7.0-0,  3.6.1-0,  3.5.2-0,  3.5.0-1,  3.5.0-0,  3.3.3-0,  3.2.0-1, 

3.7.0-2,  3.7.0-1,  3.7.0-0,  3.6.1-0,  3.5.2-0,  3.5.0-1,  3.5.0-0,  3.3.3-0,  3.2.0-1,  3.2.0-0

Depends:

• libgcc-ng >=12

• perl >=5.32.1,<5.33.0a0 *_perl5

• perl-bio-db-hts

• perl-bioperl

• perl-module-build 0.4234.*

• perl-set-intervaltree

• perl-sub-exporter-progressive 0.001013.*

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install perl-sanger-cgp-vagrent

and update with:

conda update perl-sanger-cgp-vagrent

or use the docker container:

docker pull quay.io/biocontainers/perl-sanger-cgp-vagrent:<tag>

(see perl-sanger-cgp-vagrent/tags for valid values for <tag>)

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