recipe perl-sanger-cgp-vagrent

A toolset for comparing genomic variants to reference genome annotation to identify potential biological consequences

Homepage

https://github.com/cancerit/VAGrENT

License

GPLv3

Recipe

/perl-sanger-cgp-vagrent/meta.yaml

package perl-sanger-cgp-vagrent

(downloads) docker_perl-sanger-cgp-vagrent

Versions

3.3.3-0, 3.2.0-1, 3.2.0-0

Depends libgcc-ng

>=4.9

Depends perl

>=5.26.2,<5.26.3.0a0

Depends perl-bio-db-hts

Depends perl-sub-exporter-progressive

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install perl-sanger-cgp-vagrent

and update with:

conda update perl-sanger-cgp-vagrent

or use the docker container:

docker pull quay.io/biocontainers/perl-sanger-cgp-vagrent:<tag>

(see perl-sanger-cgp-vagrent/tags for valid values for <tag>)